Added get.line command.

[mothur.git] / errorchecking.h

diff --git a/errorchecking.h b/errorchecking.h
index 1b023e079cf8ab15c8539596dc72841be7edf7a3..8b3c0cafb0e6b787d5d408083828ab39757420bc 100644 (file)
--- a/errorchecking.h
+++ b/errorchecking.h
@@ -27,6 +27,8 @@ class ErrorCheck {
                ValidCommands* validCommand;
                ValidParameters* validParameter;
                void validateReadFiles();
+               bool validCommandParameter(string, string);
+               bool validParameterValue(string, string);
                void validateReadDist();
                void validateReadPhil();
                void validateParseFiles();
@@ -34,9 +36,14 @@ class ErrorCheck {
                void clear();
                void refresh();
                string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, treefile, sharedfile, cutoff, format; 
-               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree;
+               string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund;
                string commandName, optionText;
                bool errorFree;
-               
+
+               vector<string> sharedGroups;
+               map <string, vector<string> > commandParameters;
+               map <string, vector<double> > intParams;
+               double piSent;
+
 };
 #endif