added get.oturep command

[mothur.git] / errorchecking.cpp

diff --git a/errorchecking.cpp b/errorchecking.cpp
index da1d1bbb614ffd78f03484c3ca956e3f5aba21ac..abd2a9ffeca07f4f11e9d69f283f09afc535a056 100644 (file)
--- a/errorchecking.cpp
+++ b/errorchecking.cpp
@@ -233,6 +233,16 @@ bool ErrorCheck::checkInput(string input) {
                        if ((globaldata->getListFile() == "")) { cout << "You must read a list file before you can use the bin.seqs command." << endl; return false; }
                        validateBinFiles();
                }
+               
+               if ((commandName == "get.oturep")) { 
+                       if ((globaldata->gSparseMatrix == NULL) || (globaldata->gListVector == NULL)) {
+                               cout << "Before you use the get.oturep command, you first need to read in a distance matrix." << endl; 
+                               errorFree = false;
+                       }
+                       if (listfile == "") { cout << "list is a required parameter for the get.oturep command." << endl; errorFree = false; }
+                       validateBinFiles();
+               } 
+
 
                return errorFree;
 }
@@ -484,13 +494,19 @@ void ErrorCheck::validateBinFiles() {
                int ableToOpen;
                
                if (fastafile == "") {
-                               cout << "fasta is a required parameter for bin.seqs." << endl; errorFree = false; 
+                               cout << "fasta is a required parameter for bin.seqs and get.oturep commands." << endl; errorFree = false; 
                }else if (fastafile != "") {
                        //is it a valid filename'
                        ableToOpen = openInputFile(fastafile, filehandle);
                        filehandle.close();
                        //unable to open
                        if (ableToOpen == 1) {  errorFree = false; }
+               }else if (listfile != "") {
+                       //is it a valid filename'
+                       ableToOpen = openInputFile(listfile, filehandle);
+                       filehandle.close();
+                       //unable to open
+                       if (ableToOpen == 1) {  errorFree = false; }
                }else if (globaldata->getNameFile() != "") {
                        //is it a valid filename'
                        ifstream filehandle;