This contains Pat's bug fixes and updates. It represents mothur v.1.3.0

[mothur.git] / errorchecking.cpp

diff --git a/errorchecking.cpp b/errorchecking.cpp
index c5396cfa37c314ca220d6b2cbf12692a477890eb..8b80580a26faf27b8504f55039e494952a9f1be9 100644 (file)
--- a/errorchecking.cpp
+++ b/errorchecking.cpp
@@ -116,7 +116,7 @@ bool ErrorCheck::checkInput(string input) {
                                if (parameter == "soft" )                       { soft = value; }
                                if (parameter == "filter" )         { filter = value; }
                                if (parameter == "scale" )                      { scale = value;        }
-                               if (parameter == "ends" )                       { ends = value; }
+                               if (parameter == "countends" )          { countends = value; }
                                if (parameter == "processors" )         { processors = value;   }
                                if (parameter == "size" )                       { size = value; }
                                if (parameter == "candidate")           { candidatefile = value;        }
@@ -166,7 +166,7 @@ bool ErrorCheck::checkInput(string input) {
                                if (parameter == "soft" )                       { soft = value; }
                                if (parameter == "filter" )         { filter = value; }
                                if (parameter == "scale" )                      { scale = value;        }
-                               if (parameter == "ends" )                       { ends = value; }
+                               if (parameter == "countends" )          { countends = value; }
                                if (parameter == "processors" )         { processors = value;   }
                                if (parameter == "size" )                       { size = value; }
                                if (parameter == "candidate")           { candidatefile = value;        }