sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / engine.hpp

diff --git a/engine.hpp b/engine.hpp
index d5846ba65fc287a6b7de3e7f5f6cfaa57a7f5951..460e245bf5312d81f5b15d70387cf9ec63d472f6 100644 (file)
--- a/engine.hpp
+++ b/engine.hpp
@@ -13,14 +13,11 @@
 
 
 #include "mothur.h"
-#include "globaldata.hpp"
 #include "commandoptionparser.hpp"
 #include "command.hpp"
 #include "commandfactory.hpp"
 #include "mothurout.h"
 
-class GlobalData;
-
 class Engine {
 public:
        Engine(); 
@@ -36,7 +33,6 @@ protected:
        vector<string> options;
        CommandFactory* cFactory;
        MothurOut* mout;
-       string findMothursPath();
 };
 
 
@@ -48,7 +44,6 @@ public:
        virtual bool getInput();
        int openedBatch;
 private:
-       GlobalData* globaldata;
        ifstream inputBatchFile;
        string getNextCommand(ifstream&);
 
@@ -62,7 +57,7 @@ public:
        ~InteractEngine();
        virtual bool getInput();
 private:
-       GlobalData* globaldata;
+       
 };
 
 
@@ -73,7 +68,6 @@ public:
        virtual bool getInput();
        int openedBatch;
 private:
-       GlobalData* globaldata;
        string listOfCommands;
        string getNextCommand(string&);