sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / engine.hpp

diff --git a/engine.hpp b/engine.hpp
index 0020a7f8d9d83a24b5b24c60fb0f86263edd5e44..460e245bf5312d81f5b15d70387cf9ec63d472f6 100644 (file)
--- a/engine.hpp
+++ b/engine.hpp
@@ -13,14 +13,11 @@
 
 
 #include "mothur.h"
-#include "globaldata.hpp"
 #include "commandoptionparser.hpp"
 #include "command.hpp"
 #include "commandfactory.hpp"
 #include "mothurout.h"
 
-class GlobalData;
-
 class Engine {
 public:
        Engine(); 
@@ -47,8 +44,8 @@ public:
        virtual bool getInput();
        int openedBatch;
 private:
-       GlobalData* globaldata;
        ifstream inputBatchFile;
+       string getNextCommand(ifstream&);
 
 };
 
@@ -60,7 +57,7 @@ public:
        ~InteractEngine();
        virtual bool getInput();
 private:
-       GlobalData* globaldata;
+       
 };
 
 
@@ -71,7 +68,6 @@ public:
        virtual bool getInput();
        int openedBatch;
 private:
-       GlobalData* globaldata;
        string listOfCommands;
        string getNextCommand(string&);