some bug fixes

[mothur.git] / engine.cpp

diff --git a/engine.cpp b/engine.cpp
index 65349352d791f91aceeb850b114b697037984d41..7bcb4e41185bfa2104b3ef29432db0af7cbe58a2 100644 (file)
--- a/engine.cpp
+++ b/engine.cpp
@@ -51,11 +51,12 @@ bool InteractEngine::getInput(){
                
                while(quitCommandCalled != 1){
 
+
                        mout->mothurOutEndLine();
                        
                        input = getCommand();   
                        mout->mothurOutEndLine();       
-                       
+               
                        if (mout->control_pressed) { input = "quit()"; }
                        
                        //allow user to omit the () on the quit command
@@ -331,7 +332,7 @@ bool ScriptEngine::getInput(){
                                        mout->executing = false;
                                                                        
                                        #ifdef USE_MPI
-                                       cout << pid << " is done in execute" << endl;
+                                       //cout << pid << " is done in execute" << endl;
                                                }
                                        #endif
                                }else {