//break apart path variable by ':'
vector<string> dirs;
- splitAtChar(envPath, dirs, delim);
+ mout->splitAtChar(envPath, dirs, delim);
//get path related to mothur
string mothurPath = "";
string nextCommand = "";
mout->mothurOut("mothur > ");
- getline(cin, nextCommand);
+ m->getline(cin, nextCommand);
mout->mothurOutJustToLog(toString(nextCommand));
return nextCommand;
try {
globaldata = GlobalData::getInstance();
- openedBatch = openInputFile(batchFileName, inputBatchFile);
+ openedBatch = mout->openInputFile(batchFileName, inputBatchFile);
string temppath = path.substr(0, (path.find_last_of('m')));
//break apart path variable by ':'
vector<string> dirs;
- splitAtChar(envPath, dirs, delim);
+ mout->splitAtChar(envPath, dirs, delim);
//get path related to mothur
string mothurPath = "";
}
}
- gobble(inputBatchFile);
+ mout->gobble(inputBatchFile);
}
inputBatchFile.close();
string nextcommand = "";
if (inputBatchFile.eof()) { nextcommand = "quit()"; }
- else { nextcommand = getline(inputBatchFile); }
+ else { nextcommand = mout->getline(inputBatchFile); }
return nextcommand;
}
//break apart path variable by ':'
vector<string> dirs;
- splitAtChar(envPath, dirs, delim);
+ mout->splitAtChar(envPath, dirs, delim);
//get path related to mothur
string mothurPath = "";