modified read.otu and shared command

[mothur.git] / engine.cpp

diff --git a/engine.cpp b/engine.cpp
index f0fd05ab2f46d5f6ebbd680de70639d8599da5d5..55617bc3f80a97e1832ff61c3e09678de8eca1ca 100644 (file)
--- a/engine.cpp
+++ b/engine.cpp
@@ -20,8 +20,6 @@ InteractEngine::InteractEngine(string path){
 
        globaldata = GlobalData::getInstance();
        globaldata->argv = path;
-       string logFileName = "mothur.logFile";
-       remove(logFileName.c_str());
        
        system("clear");
 }
@@ -41,33 +39,7 @@ bool InteractEngine::getInput(){
                string options = "";
                int quitCommandCalled = 0;
                
-               mothurOut("mothur v.1.4.1");
-               mothurOutEndLine();             
-               mothurOut("Last updated: 6/23/2009");
-               mothurOutEndLine();     
-               mothurOutEndLine();             
-               mothurOut("by");
-               mothurOutEndLine();             
-               mothurOut("Patrick D. Schloss");
-               mothurOutEndLine();
-               mothurOutEndLine();                     
-               mothurOut("Department of Microbiology");
-               mothurOutEndLine();             
-               mothurOut("pschloss@micro.umass.edu");
-               mothurOutEndLine();             
-               mothurOut("http://schloss.micro.umass.edu/mothur");
-               mothurOutEndLine();     
-               mothurOutEndLine();     
-               mothurOutEndLine();             
-               mothurOut("Distributed under the GNU General Public License");
-               mothurOutEndLine();
-               mothurOutEndLine();                     
-               mothurOut("Type 'help()' for information on the commands that are available");
-               mothurOutEndLine();
-               mothurOutEndLine();                     
-               mothurOut("Type 'quit()' to exit program");
-               mothurOutEndLine();     
-               
+                               
                while(quitCommandCalled != 1){
                        
                        mothurOutEndLine();
@@ -113,9 +85,7 @@ BatchEngine::BatchEngine(string path, string batchFileName){
        
                openedBatch = openInputFile(batchFileName, inputBatchFile);
                globaldata->argv = path;
-               string logFileName = "mothur.logFile";
-               remove(logFileName.c_str());
-               
+                               
                system("clear");
        
        //      char buffer = ' ';
@@ -211,9 +181,7 @@ ScriptEngine::ScriptEngine(string path, string commandString){
                listOfCommands = commandString.substr(1, (commandString.length()-1));
 
                globaldata->argv = path;
-               string logFileName = "mothur.logFile";
-               remove(logFileName.c_str());
-
+               
                system("clear");
        
        }