bugs for 1.5

[mothur.git] / engine.cpp

diff --git a/engine.cpp b/engine.cpp
index e5898036e2e4ebd5ddea0af89735ed7efacdf924..0a0f5a0ce7f0f4f0a120509e2c3d5c0e51471ecb 100644 (file)
--- a/engine.cpp
+++ b/engine.cpp
@@ -119,10 +119,7 @@ bool BatchEngine::getInput(){
                while(quitCommandCalled == 0){
        
                        if (inputBatchFile.eof()) { input = "quit()"; }
-                       else { getline(inputBatchFile, input); }
-       //cout << "input = ";           
-       //for (int i = 0; i < input.size();  i++) {  cout << input[i];  if ((input[i] == '\n') || (input[i] == '\r')) {  char c = input[i]; cout << "line feed = " << c << endl; } }
-       //cout << endl;         
+                       else { input = getline(inputBatchFile); }
                        
                        if (input[0] != '#') {