moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / distancedb.hpp

diff --git a/distancedb.hpp b/distancedb.hpp
deleted file mode 100644 (file)
index 2624d6d..0000000
--- a/distancedb.hpp
+++ /dev/null
@@ -1,45 +0,0 @@
-#ifndef DISTANCEDB_HPP
-#define DISTANCEDB_HPP
-
-/*
- *  distancedb.hpp
- *  
- *
- *  Created by westcott on 1/27/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "mothur.h"
-#include "dist.h"
-
-class DistanceDB : public Database {
-       
-public:
-       
-       DistanceDB();
-       ~DistanceDB() { delete distCalculator; }
-       
-       void generateDB() {} //doesn't generate a search db 
-       void addSequence(Sequence); 
-       string getName(int i) { return data[i].getName(); } 
-       vector<int> findClosestSequences(Sequence*, int);  // returns indexes of n closest sequences to query
-       
-       #ifdef USE_MPI  
-       int MPISend(int) {return 0;}
-       int MPIRecv(int) {return 0;}
-       #endif
-       
-private:
-       vector<Sequence> data;
-       Dist* distCalculator;
-       
-       int templateSeqsLength;
-       bool templateAligned;
-       
-       bool isAligned(string);
-       
-};
-
-#endif