added count.groups command and paralellized align.seqs for windows

[mothur.git] / distancedb.cpp

diff --git a/distancedb.cpp b/distancedb.cpp
index c1bf7e7fb08dc3fae5b3cf17f575580269677148..2cbf5cad6edf5df5b62b7c345cf09032eaf7e10f 100644 (file)
--- a/distancedb.cpp
+++ b/distancedb.cpp
@@ -13,8 +13,13 @@
 #include "distancedb.hpp"
 #include "onegapignore.h"
 
+
+/**************************************************************************************************/
+DistanceDB::DistanceDB(const DistanceDB& ddb) : data(ddb.data), templateSeqsLength(ddb.templateSeqsLength), templateAligned(ddb.templateAligned), Database(ddb) { 
+       distCalculator = new oneGapIgnoreTermGapDist(); 
+}
 /**************************************************************************************************/
-DistanceDB::DistanceDB() { 
+DistanceDB::DistanceDB() : Database() { 
        try {
                templateAligned = true;  
                templateSeqsLength = 0;