added oldfasta and column parameter to dist.seqs so you can append distances to an...

[mothur.git] / distancecommand.h

diff --git a/distancecommand.h b/distancecommand.h
index f825cfbf343455b9ba5ef4bfb89836df8775cebe..36a1e24b0986bb24a106fb3b72f6cba17f1acfce 100644 (file)
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -34,8 +34,8 @@ private:
        Dist* distCalculator;
        SequenceDB alignDB;
 
-       string countends, output, fastafile, calc, outputDir;
-       int processors;
+       string countends, output, fastafile, calc, outputDir, oldfastafile, column;
+       int processors, numNewFasta;
        float cutoff;
        map<int, int> processIDS;   //end line, processid
        vector<linePair*> lines;
@@ -53,6 +53,7 @@ private:
        #endif
        
        int convertMatrix(string);
+       bool sanityCheck();
        int convertToLowerTriangle(string);
 
 };