added mothurOutJustToScreen function and changed all counter outputs to use it.

[mothur.git] / distancecommand.h

diff --git a/distancecommand.h b/distancecommand.h
index af55406b372dbf0f56a546be4de2bc87f5072614..2f53232b5943d835e8c27adf7374a5e3a8ce168f 100644 (file)
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -119,11 +119,10 @@ static DWORD WINAPI MyDistThreadFunction(LPVOID lpParam){
                                if (pDataArray->output == "lt") { outFile << endl; }
                                
                                if(i % 100 == 0){
-                                       pDataArray->m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); pDataArray->m->mothurOutEndLine();
-                               }
+                                       pDataArray->m->mothurOutJustToScreen(toString(i) + "\t" + toString(time(NULL) - startTime)+"\n");                               }
                                pDataArray->count++;
                        }
-                       pDataArray->m->mothurOut(toString(pDataArray->count) + "\t" + toString(time(NULL) - startTime)); pDataArray->m->mothurOutEndLine();
+                       pDataArray->m->mothurOutJustToScreen(toString(pDataArray->count) + "\t" + toString(time(NULL) - startTime)+"\n");
                }else{
                        if(pDataArray->startLine == 0){ outFile << pDataArray->alignDB.getNumSeqs() << endl;    }
                        
@@ -148,11 +147,11 @@ static DWORD WINAPI MyDistThreadFunction(LPVOID lpParam){
                                outFile << endl; 
                                
                                if(i % 100 == 0){
-                                       pDataArray->m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); pDataArray->m->mothurOutEndLine();
+                                       pDataArray->m->mothurOutJustToScreen(toString(i) + "\t" + toString(time(NULL) - startTime)+"\n"); 
                                }
                                pDataArray->count++;
                        }
-                       pDataArray->m->mothurOut(toString(pDataArray->count) + "\t" + toString(time(NULL) - startTime)); pDataArray->m->mothurOutEndLine();
+                       pDataArray->m->mothurOutJustToScreen(toString(pDataArray->count) + "\t" + toString(time(NULL) - startTime)+"\n"); 
                }
                
                outFile.close();