ValidCalculators* validCalculator;
Dist* distCalculator;
SequenceDB* seqDB;
- ofstream out, phylipOut;
+ ofstream out, outFile;
ifstream in;
- string outputFileName;
string countends, phylip;
int processors;
float cutoff;
vector<linePair*> lines;
void appendFiles(string, string);
- void createProcesses(string, string);
- int driver(Dist*, SequenceDB*, int, int, string, string, float);
+ void createProcesses(string);
+ int driver(Dist*, SequenceDB*, int, int, string, float);
};