done testing 1.13.0

[mothur.git] / distancecommand.cpp

diff --git a/distancecommand.cpp b/distancecommand.cpp
index b3f0a2dd6974b3eb72120a9d6458d55e9eaac6ff..8bdd7cd05de81b8f4759d40dcf4b10e109855e5f 100644 (file)
--- a/distancecommand.cpp
+++ b/distancecommand.cpp
@@ -422,6 +422,13 @@ int DistanceCommand::execute(){
                                remove(outputFile.c_str());
                                outputFile = column;
                        }
+                       
+                       if (outputDir != "") { 
+                               string newOutputName = outputDir + m->getSimpleName(outputFile);
+                               rename(outputFile.c_str(), newOutputName.c_str());
+                               remove(outputFile.c_str());
+                               outputFile = newOutputName;
+                       }
                }