worked on hcluster. made .single command run using a sharedfile. and various other...

[mothur.git] / distancecommand.cpp

diff --git a/distancecommand.cpp b/distancecommand.cpp
index 3ac39699918f6da277ee06a7a7dde1d22c6ae546..0422532c4b11bb8e64573a6bbc734f42a8b542b2 100644 (file)
--- a/distancecommand.cpp
+++ b/distancecommand.cpp
@@ -246,8 +246,15 @@ int DistanceCommand::driver(int startLine, int endLine, string dFileName, float
                outFile << setprecision(4);
                
                if(isTrue(phylip) && startLine == 0){   outFile << alignDB.getNumSeqs() << endl;        }
+               
                for(int i=startLine;i<endLine;i++){
-                       if(isTrue(phylip))      {       outFile << alignDB.get(i).getName() << '\t';    }
+                       if(isTrue(phylip))      {       
+                               string name = alignDB.get(i).getName();
+                               if (name.length() < 10) { //pad with spaces to make compatible
+                                       while (name.length() < 10) {  name += " ";  }
+                               }
+                               outFile << name << '\t';        
+                       }
                        for(int j=0;j<i;j++){
                                distCalculator->calcDist(alignDB.get(i), alignDB.get(j));
                                double dist = distCalculator->getDist();