added warning to readBlast to warn about duplicate names in the blast file.

[mothur.git] / distancecommand.cpp

diff --git a/distancecommand.cpp b/distancecommand.cpp
index 73a38bfe023025be8b5533e20f72d28539a09cde..16fcbf56247bb73bc979f50d4b06ee4ec20e1e7c 100644 (file)
--- a/distancecommand.cpp
+++ b/distancecommand.cpp
@@ -809,7 +809,7 @@ int DistanceCommand::driverMPI(int startLine, int endLine, MPI_File& outMPI, flo
                        }
                        
                        if(i % 100 == 0){
-                               //m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
+                               m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
                                cout << i << '\t' << (time(NULL) - startTime) << endl;
                        }
                        
@@ -826,7 +826,7 @@ int DistanceCommand::driverMPI(int startLine, int endLine, MPI_File& outMPI, flo
                        
                }
                
-               //m->mothurOut(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
+               m->mothurOut(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
                cout << (endLine-1) << '\t' << (time(NULL) - startTime) << endl;        
                delete distCalculator;
                return 1;
@@ -904,7 +904,7 @@ int DistanceCommand::driverMPI(int startLine, int endLine, string file, unsigned
 
                
                        if(i % 100 == 0){
-                               //m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
+                               m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
                                cout << i << '\t' << (time(NULL) - startTime) << endl;
                        }
                        
@@ -920,7 +920,7 @@ int DistanceCommand::driverMPI(int startLine, int endLine, string file, unsigned
                        delete buf;
                }
                
-               //m->mothurOut(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
+               m->mothurOut(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
                cout << (endLine-1) << '\t' << (time(NULL) - startTime) << endl;
                MPI_File_close(&outMPI);
                delete distCalculator;
@@ -999,7 +999,7 @@ int DistanceCommand::driverMPI(int startLine, int endLine, string file, unsigned
 
                
                        if(i % 100 == 0){
-                               //m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
+                               m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
                                cout << i << '\t' << (time(NULL) - startTime) << endl;
                        }
                        
@@ -1015,7 +1015,7 @@ int DistanceCommand::driverMPI(int startLine, int endLine, string file, unsigned
                        delete buf;
                }
                
-               //m->mothurOut(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
+               m->mothurOut(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine();
                cout << (endLine-1) << '\t' << (time(NULL) - startTime) << endl;
                MPI_File_close(&outMPI);
                delete distCalculator;