moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / deuniquetreecommand.h

diff --git a/deuniquetreecommand.h b/deuniquetreecommand.h
deleted file mode 100644 (file)
index 18a6e5e..0000000
--- a/deuniquetreecommand.h
+++ /dev/null
@@ -1,46 +0,0 @@
-#ifndef DEUNIQUETREECOMMAND_H
-#define DEUNIQUETREECOMMAND_H
-
-/*
- *  deuniquetreecommand.h
- *  Mothur
- *
- *  Created by westcott on 5/27/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "sharedutilities.h"
-#include "readtree.h"
-
-class DeuniqueTreeCommand : public Command {
-       
-public:
-       DeuniqueTreeCommand(string);    
-       DeuniqueTreeCommand();
-       ~DeuniqueTreeCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "deunique.tree";               }
-       string getCommandCategory()             { return "Hypothesis Testing";          }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Deunique.tree"; }
-       string getDescription()         { return "add the redundant sequence names back into a tree of unique sequences"; }
-       
-       int execute();
-       void help() { m->mothurOut(getHelpString()); }
-       
-       
-private:
-       int numUniquesInName;
-       
-       bool abort;
-       string outputDir, treefile, namefile;
-       vector<string> outputNames;
-       map<string, string> nameMap;
-       int readNamesFile();
-};
-
-#endif