added load.logfile command. changed summary.single output for subsample=t.

[mothur.git] / deuniquetreecommand.cpp

diff --git a/deuniquetreecommand.cpp b/deuniquetreecommand.cpp
index c33c8e4ce19014c0059a89469217993a3f2fe59d..662282b1d05d57e25ee2c259f178d00c5ecf96ca 100644 (file)
--- a/deuniquetreecommand.cpp
+++ b/deuniquetreecommand.cpp
@@ -43,6 +43,26 @@ string DeuniqueTreeCommand::getHelpString(){
        }
 }
 //**********************************************************************************************************************
+string DeuniqueTreeCommand::getOutputFileNameTag(string type, string inputName=""){    
+       try {
+        string outputFileName = "";
+               map<string, vector<string> >::iterator it;
+        
+        //is this a type this command creates
+        it = outputTypes.find(type);
+        if (it == outputTypes.end()) {  m->mothurOut("[ERROR]: this command doesn't create a " + type + " output file.\n"); }
+        else {
+            if (type == "tree") {  outputFileName =  "deunique.tre"; }
+            else { m->mothurOut("[ERROR]: No definition for type " + type + " output file tag.\n"); m->control_pressed = true;  }
+        }
+        return outputFileName;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "DeuniqueTreeCommand", "getOutputFileNameTag");
+               exit(1);
+       }
+}
+//**********************************************************************************************************************
 DeuniqueTreeCommand::DeuniqueTreeCommand(){    
        try {
                abort = true; calledHelp = true; 
@@ -145,7 +165,7 @@ int DeuniqueTreeCommand::execute() {
         delete reader;         
                
                //print new Tree
-               string outputFile = outputDir + m->getRootName(m->getSimpleName(treefile)) + "deunique.tre";
+               string outputFile = outputDir + m->getRootName(m->getSimpleName(treefile)) + getOutputFileNameTag("tree");
                outputNames.push_back(outputFile); outputTypes["tree"].push_back(outputFile);
                ofstream out;
                m->openOutputFile(outputFile, out);