moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / deuniqueseqscommand.h

diff --git a/deuniqueseqscommand.h b/deuniqueseqscommand.h
deleted file mode 100644 (file)
index 300a1ca..0000000
--- a/deuniqueseqscommand.h
+++ /dev/null
@@ -1,48 +0,0 @@
-#ifndef DEUNIQUESEQSCOMMAND_H
-#define DEUNIQUESEQSCOMMAND_H
-/*
- *  deuniqueseqscommand.h
- *  Mothur
- *
- *  Created by westcott on 10/19/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "command.hpp"
-
-/* This command is the reverse of unique.seqs */ 
-
-class DeUniqueSeqsCommand : public Command {
-
-public:
-       DeUniqueSeqsCommand(string);
-       DeUniqueSeqsCommand();
-       ~DeUniqueSeqsCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "deunique.seqs";               }
-       string getCommandCategory()             { return "Sequence Processing";         }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Deunique.seqs"; }
-       string getDescription()         { return "reverse of the unique.seqs command, and creates a fasta file from a fasta and name file"; }
-
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-       
-private:
-
-       string fastaFile, nameFile, outputDir;
-       vector<string> outputNames;
-       bool abort;
-       
-       map<string, string> nameMap;
-       
-       int readNamesFile();
-       
-};
-
-#endif
-