fixes while testing 1.33.0

[mothur.git] / deuniqueseqscommand.cpp

diff --git a/deuniqueseqscommand.cpp b/deuniqueseqscommand.cpp
index a6c151c38318f4a98917e5b46f81f5b8cd7cfc27..2ccb4617ce0fa10c4229e14d617294081673771d 100644 (file)
--- a/deuniqueseqscommand.cpp
+++ b/deuniqueseqscommand.cpp
@@ -190,11 +190,9 @@ int DeUniqueSeqsCommand::execute() {
                ofstream out;
         string thisOutputDir = outputDir;
                if (outputDir == "") {  thisOutputDir += m->hasPath(fastaFile);  }
-               string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile));
-               int pos = outFastaFile.find("unique");
-               if (pos != string::npos) { outFastaFile = outputDir + outFastaFile.substr(0, pos); }
-        else { outFastaFile = outputDir + outFastaFile; }
-        map<string, string> variables; 
+        string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile));
+       
+        map<string, string> variables;
         variables["[filename]"] = outFastaFile;
         outFastaFile = getOutputFileName("fasta", variables);
                m->openOutputFile(outFastaFile, out);