- string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile));
- int pos = outFastaFile.find("unique");
- if (pos != string::npos) { outFastaFile = outputDir + outFastaFile.substr(0, pos); }
- else { outFastaFile = outputDir + outFastaFile; }
- map<string, string> variables;
+ string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile));
+
+ map<string, string> variables;