changes while testing

[mothur.git] / degapseqscommand.h

diff --git a/degapseqscommand.h b/degapseqscommand.h
index 192d6eb7397e143e5ff91389ca37a5be98857a6e..3b03c9b0ca1d8a61704dd3c13885d12d8204100a 100644 (file)
--- a/degapseqscommand.h
+++ b/degapseqscommand.h
@@ -16,9 +16,20 @@
 class DegapSeqsCommand : public Command {
 public:
        DegapSeqsCommand(string);
-       ~DegapSeqsCommand();
-       int execute();
-       void help();
+       DegapSeqsCommand();
+       ~DegapSeqsCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "degap.seqs";          }
+       string getCommandCategory()             { return "Sequence Processing";         }
+       
+       string getHelpString(); 
+    string getOutputPattern(string);   
+       string getCitation() { return "http://www.mothur.org/wiki/Degap.seqs"; }
+       string getDescription()         { return "removes gap characters from sequences"; }
+
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
        
 private: