added mpi code to cluster.split command

[mothur.git] / degapseqscommand.h

diff --git a/degapseqscommand.h b/degapseqscommand.h
new file mode 100644 (file)
index 0000000..192d6eb
--- /dev/null
+++ b/degapseqscommand.h
@@ -0,0 +1,33 @@
+#ifndef DEGAPSEQSCOMMAND_H
+#define DEGAPSEQSCOMMAND_H
+
+/*
+ *  degapseqscommand.h
+ *  Mothur
+ *
+ *  Created by westcott on 6/21/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+#include "command.hpp"
+
+class DegapSeqsCommand : public Command {
+public:
+       DegapSeqsCommand(string);
+       ~DegapSeqsCommand();
+       int execute();
+       void help();
+       
+private:
+
+       bool abort;
+       string fastafile, outputDir;
+       vector<string> outputNames;
+       vector<string> fastaFileNames;
+       
+};
+
+#endif
+