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[mothur.git] / degapseqscommand.cpp

diff --git a/degapseqscommand.cpp b/degapseqscommand.cpp
index 940672c1bef7f6ab2004a9b374011cd1f8420e85..f590d8b3baaf67091f59a741a87a23e09c8873b0 100644 (file)
--- a/degapseqscommand.cpp
+++ b/degapseqscommand.cpp
@@ -156,7 +156,7 @@ DegapSeqsCommand::DegapSeqsCommand(string option)  {
                                                        //erase from file list
                                                        fastaFileNames.erase(fastaFileNames.begin()+i);
                                                        i--;
-                                               }
+                                               }else { m->setFastaFile(fastaFileNames[i]); }
                                        }
                                }