fixes while testing

[mothur.git] / degapseqscommand.cpp

diff --git a/degapseqscommand.cpp b/degapseqscommand.cpp
index f1190c84ad58a73b66b3423cbf2d10cee907bb93..2514ae1a21bd491ffb924700b226b103ea2ca839 100644 (file)
--- a/degapseqscommand.cpp
+++ b/degapseqscommand.cpp
@@ -25,6 +25,7 @@ vector<string> DegapSeqsCommand::getValidParameters(){
 //**********************************************************************************************************************
 DegapSeqsCommand::DegapSeqsCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;