added mothur.h and fixed includes in many files

[mothur.git] / deconvolutecommand.h

diff --git a/deconvolutecommand.h b/deconvolutecommand.h
index b9b208493f2f6fea9a35055c448b65973ddc6a46..c80bb360533a8b08e819d820d72f431f722c9e1b 100644 (file)
--- a/deconvolutecommand.h
+++ b/deconvolutecommand.h
@@ -9,8 +9,6 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
 #include "command.hpp"
 #include "utilities.hpp"
 #include "fastamap.h"
@@ -32,8 +30,8 @@ private:
        GlobalData* globaldata;
        FastaMap* fastamap;
        ifstream in;
-       ofstream out;
-       string filename, outputFileName;
+       ofstream out, outFasta;
+       string filename, outputFileName, outFastafile;
 
 };