merged pat's trim seqs edits with sarah's major overhaul of global data; also added...

[mothur.git] / deconvolutecommand.h

diff --git a/deconvolutecommand.h b/deconvolutecommand.h
index 0b6eb5e1f8fbce6e0f9ba9c5cccaee56739990dc..b6bda8faa00a274369e7a23803440025c241e612 100644 (file)
--- a/deconvolutecommand.h
+++ b/deconvolutecommand.h
@@ -11,7 +11,6 @@
 
 #include "command.hpp"
 #include "fastamap.h"
-#include "globaldata.hpp"
 
 /* The unique.seqs command reads a fasta file, finds the duplicate sequences and outputs a names file
        containing 2 columns.  The first being the groupname and the second the list of identical sequence names. */ 
@@ -26,17 +25,12 @@ public:
        void help();    
        
 private:
-       GlobalData* globaldata;
        FastaMap* fastamap;
        ifstream in;
        ofstream out, outFasta;
        string filename, outputFileName, outFastafile;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
-       bool abort;
-
 
+       bool abort;
 };
 
 #endif