public:
DeconvoluteCommand(string);
- ~DeconvoluteCommand() { delete fastamap; };
+ ~DeconvoluteCommand() { };
int execute();
void help();
private:
- FastaMap* fastamap;
- ifstream in;
- ofstream out, outFasta;
- string filename, outputFileName, outFastafile;
+ string inFastaName, oldNameMapFName;
bool abort;
};