moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / deconvolutecommand.h

diff --git a/deconvolutecommand.h b/deconvolutecommand.h
deleted file mode 100644 (file)
index 487c460..0000000
--- a/deconvolutecommand.h
+++ /dev/null
@@ -1,45 +0,0 @@
-#ifndef DECONVOLUTECOMMAND_H
-#define DECONVOLUTECOMMAND_H
-/*
- *  deconvolute.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 1/21/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "command.hpp"
-#include "fastamap.h"
-
-/* The unique.seqs command reads a fasta file, finds the duplicate sequences and outputs a names file
-       containing 2 columns.  The first being the groupname and the second the list of identical sequence names. */ 
-
-
-class DeconvoluteCommand : public Command {
-
-public:
-       DeconvoluteCommand(string);
-       DeconvoluteCommand();
-       ~DeconvoluteCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "unique.seqs";         }
-       string getCommandCategory()             { return "Sequence Processing";         }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Unique.seqs"; }
-       string getDescription()         { return "creates a fasta containing the unique sequences as well as a namesfile with the names each sequence represents"; }
-
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-       
-private:
-       string inFastaName, oldNameMapFName, outputDir;
-       vector<string> outputNames;
-
-       bool abort;
-};
-
-#endif