fixes while testing

[mothur.git] / deconvolutecommand.cpp

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 3129ea0ad368cb8c08a5ca2e9f036c38e4b1a441..dd05afdd0243132497fdab828c384b287ff0b61c 100644 (file)
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -24,6 +24,7 @@ vector<string> DeconvoluteCommand::getValidParameters(){
 //**********************************************************************************************************************
 DeconvoluteCommand::DeconvoluteCommand(){      
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;