working on pam

[mothur.git] / deconvolutecommand.cpp

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 09e077b57ca8800d3663f6dd5c3515102aaa1129..98109ef33c488a071b04ad5ada84ffcab9d2e1f8 100644 (file)
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -209,7 +209,7 @@ int DeconvoluteCommand::execute() {
         }
         CountTable ct;
         if (countfile != "")  {  
-            ct.readTable(countfile);
+            ct.readTable(countfile, true, false);
             if (countfile == outCountFile){
                 //prepare filenames and open files
                 map<string, string> mvariables;