ccode working - still need to paralellize

[mothur.git] / decalc.h

diff --git a/decalc.h b/decalc.h
index da0f96cd72b69acf3350a1565f66e7586644ff12..dca562a24e549a0a640006b97415e27b804c688a 100644 (file)
--- a/decalc.h
+++ b/decalc.h
@@ -57,6 +57,8 @@ class DeCalculator {
                
                vector<int> returnObviousOutliers(vector< vector<quanMember> >, int);
                
+               map<int, int> getMaskMap() { return maskMap; }
+               
        private:
                //vector<quanMember> sortContrib(map<quanMember*, float>);  //used by mallard
                float findAverage(vector<float>);
@@ -65,6 +67,7 @@ class DeCalculator {
                string seqMask;
                set<int> h;
                int alignLength;
+               map<int, int> maskMap;
 
 };