chimeras, fix to sabundvector and sharedsabundvector that caused getRabundVector...

[mothur.git] / decalc.h

diff --git a/decalc.h b/decalc.h
index 011993652618dc38294ade4638ad0657238b9377..48a72bb9cc10f6387694bee21d5265c6f12e043d 100644 (file)
--- a/decalc.h
+++ b/decalc.h
@@ -39,7 +39,8 @@ class DeCalculator {
                DeCalculator() {};
                ~DeCalculator() {};
                
-               vector<Sequence*> findClosest(Sequence*, vector<Sequence*>, int);  //takes querySeq, a reference db and numWanted - returns indexes to closest seqs in db
+               vector<Sequence*> findClosest(Sequence*, vector<Sequence*>, int&, vector<int>&);  //takes querySeq, a reference db, numWanted and indexes 
+               Sequence* findClosest(Sequence*, vector<Sequence*>);
                set<int> getPos() {  return h;  }
                void setMask(string); 
                void setAlignmentLength(int l) {  alignLength = l;  }