virtual vector<int> findClosestSequences(Sequence*, int) = 0; // returns indexes of n closest sequences to query
virtual vector<int> findClosestMegaBlast(Sequence*, int){return results;}
virtual float getSearchScore();
+ virtual vector<float> getMegaBlastSearchScores() { return megaScores; } //assumes you already called findClosestMegaBlast
virtual int getLongestBase();
virtual void readKmerDB(ifstream&){};
virtual void setNumSeqs(int i) { numSeqs = i; }
int numSeqs, longest;
float searchScore;
vector<int> results;
+ vector<float> megaScores;
};
/**************************************************************************************************/
#endif