added alignment code

[mothur.git] / database.hpp

diff --git a/database.hpp b/database.hpp
index e80bfb5949a3ce9584ae15a136a255284b9f740f..09fea858247b23cf33b351b0d56278522cf930af 100644 (file)
--- a/database.hpp
+++ b/database.hpp
@@ -12,14 +12,17 @@
 
 #include "mothur.h"
 
+class Sequence;
+
 class Database {
 public:
        Database(string);
        virtual Sequence* findClosestSequence(Sequence*) = 0;
-       
+       virtual float getSearchScore();
 protected:
        int numSeqs;
-       vector<Sequence*> templateSequences;    
+       float searchScore;
+       vector<Sequence*> templateSequences;
 };
 
 #endif