working on chimeras

[mothur.git] / database.hpp

diff --git a/database.hpp b/database.hpp
index f52cdd58be86d31be87951df68d13983dc9bc921..79050777acd7d695754d7a382741538d35409b94 100644 (file)
--- a/database.hpp
+++ b/database.hpp
@@ -48,6 +48,7 @@ public:
        virtual void generateDB() = 0; 
        virtual void addSequence(Sequence) = 0;  //add sequence to search engine
        virtual vector<int> findClosestSequences(Sequence*, int) = 0;  // returns indexes of n closest sequences to query
+       virtual map<int, float> findClosest(Sequence*, int){ return results; }  // returns of n closest sequences to query and their search scores
        virtual float getSearchScore();
        virtual int getLongestBase(); 
        virtual void readKmerDB(ifstream&){};
@@ -59,6 +60,7 @@ public:
 protected:
        int numSeqs, longest;
        float searchScore;
+       map<int, float> results;
 };
 /**************************************************************************************************/
 #endif