addition of summary.seq command [pds]

[mothur.git] / database.cpp

diff --git a/database.cpp b/database.cpp
index 8c080dbf95e79d6dc574e52d5679747018df00fa..5b93321a4c8b0f25915d479407f5152918d12f6a 100644 (file)
--- a/database.cpp
+++ b/database.cpp
@@ -30,10 +30,10 @@ Database::Database(string fastaFileName){           //      This assumes that the template dat
        
        string seqName, sequence;
        for(int i=0;i<numSeqs;i++){
-               templateSequences[i] = new Sequence();          //      We're storing the aligned template sequences as a vector of
+//             templateSequences[i] = new Sequence();          //      We're storing the aligned template sequences as a vector of
                                                                                                        //      pointers to Sequence objects
                fastaFile >> seqName;
-               templateSequences[i]->setName(seqName);
+//             templateSequences[i]->setName(seqName);
                
                char letter;
                string aligned;
@@ -45,8 +45,9 @@ Database::Database(string fastaFileName){             //      This assumes that the template dat
                                aligned += letter;
                        }
                }
-               templateSequences[i]->setAligned(aligned);      //      Obviously, we need the fully aligned template sequence
-               templateSequences[i]->setUnaligned(aligned);//  We will also need the unaligned sequence for pairwise alignments
+               templateSequences[i] = new Sequence(seqName, aligned);
+//             templateSequences[i]->setAligned(aligned);      //      Obviously, we need the fully aligned template sequence
+//             templateSequences[i]->setUnaligned(aligned);//  We will also need the unaligned sequence for pairwise alignments
                fastaFile.putback(letter);                                      //      and database searches
        }