--- /dev/null
+#ifndef Mothur_createdatabasecommand_h
+#define Mothur_createdatabasecommand_h
+
+//
+// createdatabasecommand.h
+// Mothur
+//
+// Created by Sarah Westcott on 3/28/12.
+// Copyright (c) 2012 Schloss Lab. All rights reserved.
+//
+
+#include "command.hpp"
+#include "listvector.hpp"
+
+class CreateDatabaseCommand : public Command {
+public:
+ CreateDatabaseCommand(string);
+ CreateDatabaseCommand();
+ ~CreateDatabaseCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "create.database"; }
+ string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Create.database"; }
+ string getDescription() { return "creates database file that includes, abundances across groups, representative sequences, and taxonomy for each OTU"; }
+
+
+ int execute() {};
+ void help() { m->mothurOut(getHelpString()); }
+
+private:
+
+ bool abort;
+ string listfile, groupfile, repfastafile, repnamesfile, constaxonomyfile, label, outputDir;
+
+ vector<string> outputNames;
+
+ int readFasta();
+ int readNames();
+ int readTax();
+ int processList(ListVector*&);
+
+};
+
+
+
+
+#endif