moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / createdatabasecommand.h

diff --git a/createdatabasecommand.h b/createdatabasecommand.h
deleted file mode 100644 (file)
index 643ff6e..0000000
--- a/createdatabasecommand.h
+++ /dev/null
@@ -1,50 +0,0 @@
-#ifndef Mothur_createdatabasecommand_h
-#define Mothur_createdatabasecommand_h
-
-//
-//  createdatabasecommand.h
-//  Mothur
-//
-//  Created by Sarah Westcott on 3/28/12.
-//  Copyright (c) 2012 Schloss Lab. All rights reserved.
-//
-
-#include "command.hpp"
-#include "listvector.hpp"
-#include "sequence.hpp"
-
-class CreateDatabaseCommand : public Command {
-public:
-       CreateDatabaseCommand(string);
-       CreateDatabaseCommand();
-       ~CreateDatabaseCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "create.database";             }
-       string getCommandCategory()             { return "OTU-Based Approaches"; }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Create.database"; }
-       string getDescription()         { return "creates database file that includes, abundances across groups, representative sequences, and taxonomy for each OTU"; }
-    
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-private:
-       
-       bool abort;
-       string listfile, groupfile, repfastafile, repnamesfile, contaxonomyfile, label, outputDir;
-       
-       vector<string> outputNames;
-               
-       vector<int> readFasta(vector<Sequence>&);
-    vector<int> readTax(vector<string>&);
-    int readNames(map<string, string>&); 
-       ListVector* getList();
-       
-};
-
-
-
-
-#endif