}
repNames = tempRepNames;
}else {
- ct.readTable(countfile, true);
+ ct.readTable(countfile, true, false);
numUniqueNamesFile = ct.getNumUniqueSeqs();
nameMap = ct.getNameMap();
}
try {
int index = -1;
for (int i = 0; i < otuLabels.size(); i++) {
- if (otuLabels[i] == label) { index = i; break; }
+ if (m->isLabelEquivalent(otuLabels[i],label)) { index = i; break; }
}
return index;
}