working on libshuff

[mothur.git] / coverage.h

diff --git a/coverage.h b/coverage.h
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+#ifndef COVERAGE_H
+#define COVERAGE_H
+
+/*
+ *  coverage.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 3/9/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "fullmatrix.h"
+#include "globaldata.hpp"
+
+using namespace std;
+
+/***********************************************************************/
+
+class Coverage  {
+       
+       public: 
+               Coverage(){};
+               ~Coverage(){};
+               vector< vector<float> > getValues(FullMatrix*, float);  
+               
+       private:
+               GlobalData* globaldata;
+               vector< vector<float> > data;
+               int numGroups;
+
+};
+
+
+/***********************************************************************/
+
+
+
+#endif
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