made make.table alias to count.seqs command. added large parameter to count.seqs...

[mothur.git] / countseqscommand.h

diff --git a/countseqscommand.h b/countseqscommand.h
index 54982c11939e82fae8de341f74c1aa3a01e4f609..555d6a74fa36fa034b6d0aafeb5f07bd0c4e7bbc 100644 (file)
--- a/countseqscommand.h
+++ b/countseqscommand.h
@@ -34,8 +34,14 @@ public:
        
 private:
        string namefile, groupfile, outputDir, groups;
-       bool abort;
-       vector<string> Groups;
+       bool abort, large;
+       vector<string> Groups, outputNames;
+    
+    int processSmall(string);
+    int processLarge(string);
+    map<int, string> processNameFile(string);
+    map<int, string> getGroupNames(string, set<string>&);
+    
 };
 
 #endif