added multiple processors option for Windows users to align.seqs, dist.seqs, summary...

[mothur.git] / countseqscommand.cpp

diff --git a/countseqscommand.cpp b/countseqscommand.cpp
index 0d8ddf5440c324b3d7fa12cc4cff92aef4996b3b..9cdd033ac29609d6f763f52597a4809fea204326 100644 (file)
--- a/countseqscommand.cpp
+++ b/countseqscommand.cpp
@@ -157,7 +157,8 @@ int CountSeqsCommand::execute(){
                        
                        //make sure groups are valid. takes care of user setting groupNames that are invalid or setting groups=all
                        SharedUtil* util = new SharedUtil();
-                       util->setGroups(Groups, groupMap->namesOfGroups);
+                       vector<string> nameGroups = groupMap->getNamesOfGroups();
+                       util->setGroups(Groups, nameGroups);
                        delete util;
                        
                        //sort groupNames so that the group title match the counts below, this is needed because the map object automatically sorts