major change to the tree class to use the count table class instead of tree map....

[mothur.git] / countseqscommand.cpp

diff --git a/countseqscommand.cpp b/countseqscommand.cpp
index 7b9aebfbd63d496600a518bca7404f7a4cf4ada0..75d21c2250166d202f71ed21786dca16db40a38f 100644 (file)
--- a/countseqscommand.cpp
+++ b/countseqscommand.cpp
@@ -10,6 +10,7 @@
 #include "countseqscommand.h"
 #include "groupmap.h"
 #include "sharedutilities.h"
+#include "counttable.h"
 
 //**********************************************************************************************************************
 vector<string> CountSeqsCommand::setParameters(){      
@@ -175,7 +176,7 @@ int CountSeqsCommand::execute(){
         int total = 0;
         if (!large) { total = processSmall(outputFileName); }
         else { total = processLarge(outputFileName);  }
-                               
+        
                if (m->control_pressed) { m->mothurRemove(outputFileName); return 0; }
                
         //set rabund file as new current rabundfile