added modify names parameter to set.dir

[mothur.git] / corraxescommand.h

diff --git a/corraxescommand.h b/corraxescommand.h
index 45b6989406fc8f5610315dbe0adb511ca4c2349b..a91a24019c46b1b8d7346fd87e5a45ea957242a9 100644 (file)
--- a/corraxescommand.h
+++ b/corraxescommand.h
@@ -24,8 +24,11 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "corr.axes";                           }
        string getCommandCategory()             { return "Hypothesis Testing";          }
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Corr.axes"; }
+       string getDescription()         { return "calculate the correlation coefficient for each column in a shared/relabund file to the axes displayed in a pcoa file"; }
        
        int execute();
        void help() { m->mothurOut(getHelpString()); }