pca command

[mothur.git] / corraxescommand.h

diff --git a/corraxescommand.h b/corraxescommand.h
index e02c52a002b338f4f8d255b2daccbc571d16651b..8547b0fa1978a6d5477b9d393d0846455a3ad00a 100644 (file)
--- a/corraxescommand.h
+++ b/corraxescommand.h
@@ -11,7 +11,6 @@
  */
 
 #include "command.hpp"
-#include "sharedrabundvector.h"
 #include "sharedrabundfloatvector.h"
 #include "inputdata.h"
 
@@ -47,14 +46,11 @@ private:
        
        vector<string> outputNames, Groups;
        map<string, vector<string> > outputTypes;
-       vector<SharedRAbundVector*> lookup;
        vector<SharedRAbundFloatVector*> lookupFloat;
        vector<string> metadataLabels;
        
-       int getShared();
-       int getSharedFloat();
+       int getSharedFloat(InputData*);
        int getMetadata();
-       int convertToRelabund();
        int eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&);
        map<string, vector<float> > readAxes();
        int calcPearson(map<string, vector<float> >&, ofstream&);