#include "sharedrabundfloatvector.h"
#include "inputdata.h"
+/***************************************************************/
+struct spearmanRank {
+ string name;
+ float score;
+
+ spearmanRank(string n, float s) : name(n), score(s) {}
+};
+/***************************************************************/
+
class CorrAxesCommand : public Command {
public:
CorrAxesCommand(string);
void help();
private:
+
+
GlobalData* globaldata;
string axesfile, sharedfile, relabundfile, metadatafile, groups, label, inputFileName, outputDir, method;
bool abort, pickedGroups;
map<string, vector<float> > readAxes();
int calcPearson(map<string, vector<float> >&, ofstream&);
int calcSpearman(map<string, vector<float> >&, ofstream&);
+ int calcKendall(map<string, vector<float> >&, ofstream&);
};