working on current change

[mothur.git] / corraxescommand.cpp

diff --git a/corraxescommand.cpp b/corraxescommand.cpp
index 791ec4978fd82d2fb692723fc105dfd5b6c041f0..cd188b8a921a33aaac255852b5ab22d6008f605e 100644 (file)
--- a/corraxescommand.cpp
+++ b/corraxescommand.cpp
@@ -140,12 +140,12 @@ CorrAxesCommand::CorrAxesCommand(string option)  {
                        sharedfile = validParameter.validFile(parameters, "shared", true);
                        if (sharedfile == "not open") { abort = true; }
                        else if (sharedfile == "not found") { sharedfile = ""; }
-                       else { inputFileName = sharedfile; }
+                       else { inputFileName = sharedfile; m->setSharedFile(sharedfile); }
                        
                        relabundfile = validParameter.validFile(parameters, "relabund", true);
                        if (relabundfile == "not open") { abort = true; }
                        else if (relabundfile == "not found") { relabundfile = ""; }
-                       else { inputFileName = relabundfile; }
+                       else { inputFileName = relabundfile; m->setRelAbundFile(relabundfile); }
                        
                        metadatafile = validParameter.validFile(parameters, "metadata", true);
                        if (metadatafile == "not open") { abort = true; }