fixed bug in corr.axes so that it now uses the shared files bin numbers. finished...

[mothur.git] / corraxescommand.cpp

diff --git a/corraxescommand.cpp b/corraxescommand.cpp
index a1c3a3d6cd9e6849fb5f86be42a1d46bcd9bc138..c27eb4b9ac335112f19244c708cee9bb8630feda 100644 (file)
--- a/corraxescommand.cpp
+++ b/corraxescommand.cpp
@@ -321,7 +321,7 @@ int CorrAxesCommand::calcPearson(map<string, vector<float> >& axes, ofstream& ou
           //for each otu
           for (int i = 0; i < lookupFloat[0]->getNumBins(); i++) {
                   
-                  if (metadatafile == "") {  out << i+1;       }
+                  if (metadatafile == "") {  out << m->currentBinLabels[i];    }
                   else {  out << metadataLabels[i];            }
                                   
                   //find the averages this otu - Y
@@ -456,7 +456,7 @@ int CorrAxesCommand::calcSpearman(map<string, vector<float> >& axes, ofstream& o
                //for each otu
                for (int i = 0; i < lookupFloat[0]->getNumBins(); i++) {
                        
-                       if (metadatafile == "") {  out << i+1;  }
+                       if (metadatafile == "") {  out << m->currentBinLabels[i];       }
                        else {  out << metadataLabels[i];               }
                        
                        //find the ranks of this otu - Y
@@ -609,7 +609,7 @@ int CorrAxesCommand::calcKendall(map<string, vector<float> >& axes, ofstream& ou
                //for each otu
                for (int i = 0; i < lookupFloat[0]->getNumBins(); i++) {
                
-                       if (metadatafile == "") {  out << i+1;  }
+                       if (metadatafile == "") {  out << m->currentBinLabels[i];       }
                        else {  out << metadataLabels[i];               }
                        
                        //find the ranks of this otu - Y